课程信息
3.6
383 个评分
114 个审阅
Learn to use the tools that are available from the Galaxy Project. This is the second course in the Genomic Big Data Science Specialization....
Stacks
Globe

100% 在线课程

立即开始,按照自己的计划学习。
Calendar

可灵活调整截止日期

根据您的日程表重置截止日期。
Clock

Approx. 11 hours to complete

建议:3 hours/week...
Comment Dots

English

字幕:English...

您将获得的技能

BioinformaticsData AnalysisGenomeGenomics
Stacks
Globe

100% 在线课程

立即开始,按照自己的计划学习。
Calendar

可灵活调整截止日期

根据您的日程表重置截止日期。
Clock

Approx. 11 hours to complete

建议:3 hours/week...
Comment Dots

English

字幕:English...

教学大纲 - 您将从这门课程中学到什么

Week
1
Clock
完成时间为 1 小时

Introduction

This week, we will present some of the research challenges that motivated the development of the Galaxy framework. We will then introduce Galaxy, describe what the Galaxy framework is, and look at different ways you can use it....
Reading
2 个视频(共 13 分钟), 4 个阅读材料, 1 个测验
Video2 个视频
Introduction to the Galaxy Platform5分钟
Reading4 个阅读材料
Welcome10分钟
Syllabus10分钟
Pre-Course Survey10分钟
A Note about AWS10分钟
Quiz1 个练习
Module 1 Quiz22分钟
Week
2
Clock
完成时间为 2 小时

Galaxy 101

In this module and the following modules we will start to use Galaxy to perform different types of analysis. ...
Reading
3 个视频(共 42 分钟), 1 个测验
Video3 个视频
Galaxy 101: Workflows12分钟
Annotation, Sharing, and Publishing13分钟
Quiz1 个练习
Module 2 Quiz56分钟
Week
3
Clock
完成时间为 1 小时

Working with sequence data

In this module we will be studying sequence data quality control as well as ChIP-Sequence Analysis with MACS....
Reading
2 个视频(共 25 分钟), 1 个测验
Video2 个视频
ChIP-Sequence Analysis with MACS14分钟
Quiz1 个练习
Module 3 Quiz18分钟
Week
4
Clock
完成时间为 4 小时

RNA-seq & Running your own Galaxy

In these final modules, we'll take a look at working with sequence data and RNA-seq and at installing and running your own Galaxy....
Reading
4 个视频(共 49 分钟), 2 个阅读材料, 3 个测验
Video4 个视频
RNA Sequence Analysis: Assembly Quantitation, and Differential Expression12分钟
Installing Galaxy Locally8分钟
Galaxy on the Cloud19分钟
Reading2 个阅读材料
TopHat availability10分钟
Post-Course Survey10分钟
Quiz2 个练习
Module 4 Quiz22分钟
Module 5 Quiz20分钟
3.6
Briefcase

83%

通过此课程获得实实在在的工作福利

热门审阅

创建者 BGFeb 3rd 2018

Great Course if you are interested in dissecting the genome. Galaxy opens up this invisible world and allows even us little people to explore the world once reserved to only Academia.

创建者 GKSep 6th 2018

This was a lot of work and rewarding to complete. The final project was challenging and the forum contributors helped a lot in pointing out good resources or strategies they had used.

讲师

James Taylor, PhD

Associate Professor of Biology and Computer Science

关于 Johns Hopkins University

The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world....

关于 Genomic Data Science 专项课程

This specialization covers the concepts and tools to understand, analyze, and interpret data from next generation sequencing experiments. It teaches the most common tools used in genomic data science including how to use the command line, Python, R, Bioconductor, and Galaxy. The sequence is a stand alone introduction to genomic data science or a perfect compliment to a primary degree or postdoc in biology, molecular biology, or genetics. To audit Genomic Data Science courses for free, visit https://www.coursera.org/jhu, click the course, click Enroll, and select Audit....
Genomic Data Science

常见问题

  • Once you enroll for a Certificate, you’ll have access to all videos, quizzes, and programming assignments (if applicable). Peer review assignments can only be submitted and reviewed once your session has begun. If you choose to explore the course without purchasing, you may not be able to access certain assignments.

  • When you enroll in the course, you get access to all of the courses in the Specialization, and you earn a certificate when you complete the work. Your electronic Certificate will be added to your Accomplishments page - from there, you can print your Certificate or add it to your LinkedIn profile. If you only want to read and view the course content, you can audit the course for free.

还有其他问题吗?请访问 学生帮助中心