课程信息
4.2
226 个评分
67 个审阅
专项课程
100% 在线

100% 在线

立即开始,按照自己的计划学习。
可灵活调整截止日期

可灵活调整截止日期

根据您的日程表重置截止日期。
完成时间(小时)

完成时间大约为26 小时

建议:7 hours/week...
可选语言

英语(English)

字幕:英语(English)

您将获得的技能

BioinformaticsSamtoolsUnixCommand-Line Interface
专项课程
100% 在线

100% 在线

立即开始,按照自己的计划学习。
可灵活调整截止日期

可灵活调整截止日期

根据您的日程表重置截止日期。
完成时间(小时)

完成时间大约为26 小时

建议:7 hours/week...
可选语言

英语(English)

字幕:英语(English)

教学大纲 - 您将从这门课程中学到什么

1
完成时间(小时)
完成时间为 3 小时

Basic Unix Commands

In this module, you will be introduced to command Line Tools for Genomic Data Science...
Reading
12 个视频 (总计 105 分钟), 5 个阅读材料, 2 个测验
Video12 个视频
Basic Unix Commands 2: Files, Directories, Paths7分钟
Basic Unix Commands 3: File Naming4分钟
Basic Unix Commands 4: Content Creation9分钟
Basic Unix Commands 5: Accessing Content I6分钟
Basic Unix Commands 6: Accessing Content II4分钟
Basic Unix Commands 7: Redirecting Content6分钟
Basic Unix Commands 8: Querying Content15分钟
Basic Unix Commands 9: Comparing Content11分钟
Basic Unix Commands 10: Archiving Content13分钟
Basic Unix Commands 11: Practical Exercises I13分钟
Basic Unix Commands 12: Practical Exercises II9分钟
Reading5 个阅读材料
Welcome Message10分钟
Syllabus10分钟
VMBox Download & Instructions10分钟
Pre-Course Survey10分钟
Module 1 Exam Instructions **IMPORTANT**10分钟
Quiz2 个练习
Module 1 Quiz20分钟
Module 1 Exam34分钟
2
完成时间(小时)
完成时间为 3 小时

Week Two

In this module, we'll be taking a look at Sequences and Genomic Features in a sequence of 10 presentations. ...
Reading
11 个视频 (总计 127 分钟), 1 个阅读材料, 2 个测验
Video11 个视频
Sequences and Genomic Features 2: Sequence Representation and Generation11分钟
Sequences and Genomic Features 3: Annotation14分钟
Sequences and Genomic Features 4.1: Alignment I13分钟
Sequences and Genomic Features 4.2: Alignment II9分钟
Sequences and Genomic Features 5: Recreating Sequences & Features12分钟
Sequences and Genomic Features 6: Genomic Feature Retrieval5分钟
Sequences and Genomic Features 7: SAMtools I11分钟
Sequences and Genomic Features 8: SAMtools II9分钟
Sequences and Genomic Features 9: BEDtools I15分钟
Sequences and Genomic Features 10: BEDtools II15分钟
Reading1 个阅读材料
Module 2 Exam Instructions **IMPORTANT**10分钟
Quiz2 个练习
Module 2 Quiz20分钟
Module 2 Exam40分钟
3
完成时间(小时)
完成时间为 2 小时

Week Three

In this module, we'll be going over Alignment and Sequence Variation in another sequence of 8 presentations....
Reading
8 个视频 (总计 55 分钟), 1 个阅读材料, 2 个测验
Video8 个视频
Alignment & Sequence Variation 2: Alignment & Variant Detection Tools5分钟
Alignment & Sequence Variation 3: VCF11分钟
Alignment & Sequence Variation 4: Bowtie9分钟
Alignment & Sequence Variation 5: BWA 4分钟
Alignment & Sequence Variation 6: SAMtools (mpileup)6分钟
Alignment & Sequence Variation 7: BCFtools8分钟
Alignment & Sequence Variation 8: Variant Calling5分钟
Reading1 个阅读材料
Module 3 Exam Instructions **IMPORTANT**10分钟
Quiz2 个练习
Module 3 Quiz20分钟
Module 3 Exam48分钟
4
完成时间(小时)
完成时间为 3 小时

Week Four

In this module, we'll be going over Tools for Transcriptomics in a sequence of 6 presentations....
Reading
8 个视频 (总计 75 分钟), 2 个阅读材料, 2 个测验
Video8 个视频
Tools for Transcriptomics 2: RNA-seq7分钟
Tools for Transcriptomics 3.1: Tophat I9分钟
Tools for Transcriptomics 3.2: Tophat II 8分钟
Tools for Transcriptomics 4: Cufflinks10分钟
Tools for Transcriptomics 5: Cuffdiff16分钟
Tools for Transcriptomics 6.1: Integrated Genomics Viewer I8分钟
Tools for Transcriptomics 6.2: Integrated Genomics Viewer II 6分钟
Reading2 个阅读材料
Module 4 Exam Instructions **IMPORTANT**10分钟
Post-Course Survey10分钟
Quiz2 个练习
Module 4 Quiz20分钟
Module 4 Exam10分钟
4.2
67 个审阅Chevron Right
职业方向

33%

完成这些课程后已开始新的职业生涯
工作福利

83%

通过此课程获得实实在在的工作福利

热门审阅

创建者 JJJun 23rd 2018

Thank you very much Dr./Professor, Liliana Florea. I've learned a lot. It's a very good opportunity to improve my knowledge. This means a lot to me.

创建者 GVMar 14th 2016

Very informative course. Because I am new to this, it was at times confusing. But overall, great teaching and great experience. Thank you.

讲师

Avatar

Liliana Florea, PhD

Assistant Professor
McKusick-Nathans Institute of Genetic Medicine

关于 Johns Hopkins University

The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world....

关于 Genomic Data Science 专项课程

This specialization covers the concepts and tools to understand, analyze, and interpret data from next generation sequencing experiments. It teaches the most common tools used in genomic data science including how to use the command line, Python, R, Bioconductor, and Galaxy. The sequence is a stand alone introduction to genomic data science or a perfect compliment to a primary degree or postdoc in biology, molecular biology, or genetics. To audit Genomic Data Science courses for free, visit https://www.coursera.org/jhu, click the course, click Enroll, and select Audit....
Genomic Data Science

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