Chevron Left
返回到 Whole genome sequencing of bacterial genomes - tools and applications

学生对 丹麦技术大学 提供的 Whole genome sequencing of bacterial genomes - tools and applications 的评价和反馈

4.6
1,178 个评分

课程概述

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

热门审阅

AP

Jul 19, 2020

Thank you very much for this course through which i learnt basic handling of bioinformatics tools and concepts of WGS. This will help me a lot while pursuing my PhD research work in my field.

MB

Jun 9, 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

筛选依据:

151 - Whole genome sequencing of bacterial genomes - tools and applications 的 175 个评论(共 320 个)

创建者 Jutimala P

Jun 30, 2020

indeed a very well explained course on bacterial genome sequencing

创建者 Filippo S

Aug 2, 2021

practical, interesting, the final project/challenge was fantastic

创建者 Neha G

Jul 10, 2020

Detailed course, learned to utilize various bioinformatics tools.

创建者 Kotla S

Apr 27, 2022

Very designed and useful video and nice explanation by DTU staff

创建者 Arthur d M P

Jun 30, 2020

in fact it was a really hard, but i am happy that i have done it

创建者 Dr. S K

May 19, 2020

It is really a great experience, I have learnt a lot. Thank you

创建者 Devina B

Jan 15, 2020

Great it was amazingly delivered and straightforward.

Thank you

创建者 Rama V

Jan 13, 2021

Extremely good course on Whole Genome Sequence Analysis Tools

创建者 Vedant G

Sep 4, 2020

Excellent course and gained very useful knowledge from tutors

创建者 CHANCHALA A

Jul 3, 2020

Feeling happy to learn all these courses for my future scope

创建者 Hassan

Jun 12, 2019

The Design, of course, is best as per researcher requirement.

创建者 Suramya S

Jul 18, 2022

I thoroughly enjoyed this course and learned a lot as well.

创建者 Adil M

Jul 1, 2019

It was highly informative and interesting. I enjoyed alot

创建者 Sufiyan M

Jul 27, 2021

It was much informative and well prepared and conceptual

创建者 Nagwan G E M

Aug 27, 2020

very useful and intersting course I finshed it in 4 days

创建者 Sylvia D

Jan 17, 2021

very useful bioinformatics course with hand on training

创建者 Marc B F

May 2, 2018

The tools provided are very interesting and easy to use

创建者 劉時詠[Alex]

Dec 16, 2021

p​refect class, with proper training for the students

创建者 julio a a j

Mar 15, 2018

excelente curso me sirvió mucho para mi phD, gracias!

创建者 Blanchard B

May 8, 2022

All I expected to learn by following this course.

创建者 Toyin A A

Sep 4, 2019

Its quite interesting and technical. i enjoyed it

创建者 Aneezay J

Jul 17, 2022

It is very brilliant experience in coursera.

创建者 Mohamed H A E

Apr 19, 2020

I'm so happy for being one of your learners..

创建者 Eloy H

Oct 28, 2018

It's a great course and it's not so difficult

创建者 Dhanashree J A

Nov 20, 2020

Very well explained and interesting course.