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学生对 丹麦技术大学 提供的 Whole genome sequencing of bacterial genomes - tools and applications 的评价和反馈

4.6
956 个评分
255 条评论

课程概述

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

热门审阅

AP
Jul 19, 2020

Thank you very much for this course through which i learnt basic handling of bioinformatics tools and concepts of WGS. This will help me a lot while pursuing my PhD research work in my field.

MB
Jun 9, 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

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101 - Whole genome sequencing of bacterial genomes - tools and applications 的 125 个评论(共 255 个)

创建者 Dwayne P

Sep 3, 2017

Excellent, had so much fun doing the course. Thank you DTU team, you guys are amazing.

创建者 Josep R C

Oct 8, 2020

A very complete course about how to use the genomic tools freely available at the CGE

创建者 Gajanan T

Sep 25, 2020

Thank you so much, this course is very informative and helpful in my academic carrier

创建者 J K . S

Feb 11, 2018

FANTASTIC COURSE...!!!! HELPED ME TO DEVELOP INTEREST IN MOLECULAR BIOLOGY .

创建者 Manikandan M

Oct 16, 2017

GOOD ONE TO GET KNOWLEDGE ABOUT WHOLE GENOME SEQUENCING AND BACTERIAL SUB TYPING

创建者 hargun k

Jul 30, 2020

It was an excellent course. really enjoyed learning and improving my skill set.

创建者 Pitithat p

Aug 29, 2017

Very nice comprehensive course. Looking forward to join the metagenomic course

创建者 Raj S

Jan 20, 2021

It is a useful course for those with a basic knowledge of sequence analysis.

创建者 Dr. J T

Aug 25, 2020

It has been a different experience. All the classes were really informative.

创建者 Kumar v

Mar 17, 2019

Course contains relevant application based material. It was quite helpful.

创建者 Heba M M

Oct 14, 2017

Good course, with amazing hands-on practice. Thanks it was really helpful.

创建者 Dr. D K N

Mar 23, 2020

This course is beneficial for microbial study with bioinformatics tools.

创建者 Adithya A

May 23, 2018

EXCELLENT COURSE GOOD FOR ANY ONE WHO HAS A BASIC KNOWLEDGE ON GENETICS

创建者 Olalekan O

May 6, 2020

It's quite an instructive, impactful and beneficial to my new course.

创建者 Munirah F A

Sep 1, 2020

Good information and easy to get all the information, Thank you all

创建者 Darío A G V

Feb 4, 2021

Very useful course, most of the classes are easily understandable.

创建者 Jutimala P

Jun 30, 2020

indeed a very well explained course on bacterial genome sequencing

创建者 Neha G

Jul 10, 2020

Detailed course, learned to utilize various bioinformatics tools.

创建者 Arthur d M P

Jun 30, 2020

in fact it was a really hard, but i am happy that i have done it

创建者 Dr. S K

May 19, 2020

It is really a great experience, I have learnt a lot. Thank you

创建者 Devina B

Jan 15, 2020

Great it was amazingly delivered and straightforward.

Thank you

创建者 Rama V

Jan 13, 2021

Extremely good course on Whole Genome Sequence Analysis Tools

创建者 Vedant G

Sep 4, 2020

Excellent course and gained very useful knowledge from tutors

创建者 CHANCHALA A

Jul 3, 2020

Feeling happy to learn all these courses for my future scope

创建者 Syed H A

Jun 12, 2019

The Design, of course, is best as per researcher requirement.