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学生对 丹麦技术大学 提供的 Whole genome sequencing of bacterial genomes - tools and applications 的评价和反馈

4.6
962 个评分
256 条评论

课程概述

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

热门审阅

AP
Jul 19, 2020

Thank you very much for this course through which i learnt basic handling of bioinformatics tools and concepts of WGS. This will help me a lot while pursuing my PhD research work in my field.

MB
Jun 9, 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

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126 - Whole genome sequencing of bacterial genomes - tools and applications 的 150 个评论(共 255 个)

创建者 CHANCHALA A

Jul 3, 2020

Feeling happy to learn all these courses for my future scope

创建者 Hassan

Jun 12, 2019

The Design, of course, is best as per researcher requirement.

创建者 Adil M

Jul 1, 2019

It was highly informative and interesting. I enjoyed alot

创建者 Nagwan G E M

Aug 27, 2020

very useful and intersting course I finshed it in 4 days

创建者 Sylvia D

Jan 17, 2021

very useful bioinformatics course with hand on training

创建者 Marc B F

May 2, 2018

The tools provided are very interesting and easy to use

创建者 julio a a j

Mar 15, 2018

excelente curso me sirvió mucho para mi phD, gracias!

创建者 Toyin A A

Sep 4, 2019

Its quite interesting and technical. i enjoyed it

创建者 Mohamed H A E

Apr 19, 2020

I'm so happy for being one of your learners..

创建者 Eloy H

Oct 28, 2018

It's a great course and it's not so difficult

创建者 Dhanashree J A

Nov 20, 2020

Very well explained and interesting course.

创建者 Zuzana K

Feb 25, 2020

Great course, I found it extremely helpful.

创建者 Shimul D

May 30, 2020

That was really awesome.Thanks to everyone

创建者 Ahmed E A e

Oct 31, 2018

It isa fantastic course to spend your time

创建者 Kris s

Dec 8, 2017

Genuinly seems fun.

Keep it up Team at TUD

创建者 Valourstar M

Nov 15, 2017

developing skills in sequencing techniques

创建者 Sonia R Q Q

Sep 16, 2019

a complete an interesting course, thanks!

创建者 Md. A A

Jul 26, 2020

Its an awesome and very helpful course

创建者 SHAKIL A

Aug 31, 2020

Too much tough but still too amazing!

创建者 Sharma

Nov 25, 2019

Great course. Excellent for research.

创建者 Dordia R

Jun 26, 2020

practical and clear. Really helpful!

创建者 Deepak S

Apr 2, 2020

Excellent course, great instructors.

创建者 Eunice O

Sep 26, 2020

such an excellent practical course.

创建者 Tahir H

Dec 23, 2019

a good experience to get knowledge

创建者 Jenny S

Jun 11, 2020

really helpful and awesome course