课程信息
4.6
134 ratings
26 reviews
Neurohacking describes how to use the R programming language (https://cran.r-project.org/) and its associated package to perform manipulation, processing, and analysis of neuroimaging data. We focus on publicly-available structural magnetic resonance imaging (MRI). We discuss concepts such as inhomogeneity correction, image registration, and image visualization. By the end of this course, you will be able to: Read/write images of the brain in the NIfTI (Neuroimaging Informatics Technology Initiative) format Visualize and explore these images Perform inhomogeneity correction, brain extraction, and image registration (within a subject and to a template)....
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100% 在线课程

立即开始,按照自己的计划学习。
Calendar

可灵活调整截止日期

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Intermediate Level

中级

Clock

建议:4 weeks of study, 2-4 hours/week

完成时间大约为11 小时
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English

字幕:English

您将获得的技能

Image ProcessingBrainR ProgrammingNeurology
Globe

100% 在线课程

立即开始,按照自己的计划学习。
Calendar

可灵活调整截止日期

根据您的日程表重置截止日期。
Intermediate Level

中级

Clock

建议:4 weeks of study, 2-4 hours/week

完成时间大约为11 小时
Comment Dots

English

字幕:English

教学大纲 - 您将从这门课程中学到什么

1

章节
Clock
完成时间为 1 小时

Introduction

...
Reading
3 个视频(共 30 分钟), 1 个阅读材料, 1 个测验
Video3 个视频
Introduction11分钟
Structural MRI and R12分钟
Reading1 个阅读材料
Syllabus10分钟
Quiz1 个练习
Theme 1 Quiz16分钟

2

章节
Clock
完成时间为 2 小时

Neuroimaging: Formats and Visualization

In this section, we will discuss different formats that brain images come in, as well as some of the commonly done magnetic resonance imaging (MRI) scans....
Reading
7 个视频(共 74 分钟), 6 个测验
Video7 个视频
The NIfTI Format9分钟
Basic Visualization 19分钟
Basic Visualization 29分钟
Basic Data Manipulation9分钟
Transformations and Smoothing14分钟
Basic MRI Contrasts9分钟
Quiz6 个练习
Theme 2 Lecture 1 Quiz10分钟
Theme 2 Lecture 2 Quiz10分钟
Theme 2 Lecture 3 Quiz10分钟
Theme 2 Lecture 4 Quiz10分钟
Theme 2 Lecture 5 Quiz10分钟
Theme 2 Lecture 6 Quiz10分钟

3

章节
Clock
完成时间为 3 小时

Image Processing

In this section, we will discuss the steps done to process brain MRI data. We will discuss inhomogeneity correction, brain extraction or skull stripping, and various image registration techniques....
Reading
9 个视频(共 71 分钟), 9 个测验
Video9 个视频
Registration15分钟
fslr: System Requirements8分钟
Bias Field Correction Using fslr3分钟
Brain Extraction using fslr5分钟
Image Registration Using fslr5分钟
Installing ANTsR5分钟
Basic Data Manipulation with ANTsR4分钟
Pre-Processing with ANTSR7分钟
Quiz9 个练习
Theme 3 Quiz 110分钟
Theme 3 Quiz 210分钟
Theme 3 Quiz 312分钟
Theme 3 Quiz 410分钟
Theme 3 Quiz 510分钟
Theme 3 Quiz 610分钟
Theme 3 Quiz 710分钟
Theme 3 Quiz 810分钟
Theme 3 Quiz 910分钟

4

章节
Clock
完成时间为 3 小时

Extended Image Processing

In this section, we will discuss the different types of registration and how one would go through processing a multi-sequence MRI scan, as well as wrapper functions that make the process much easier. We also cover interactive exploration of brain image data and tissue-level (white/gray matter and cerebrospinal fluid (CSF)) segmentation from a T1-weighted image....
Reading
11 个视频(共 101 分钟), 1 个阅读材料, 10 个测验
Video11 个视频
Co-Registration using fslr9分钟
Co-Registration using ANTsR9分钟
Wrapper Functions for Processing Pipelines8分钟
Across-Visit Co-Registration of T1 Images6分钟
Rigid Registration to a Template8分钟
Affine Registration of T1 to Template4分钟
Nonlinear Registration of T1 to Template6分钟
Getting ROI Anatomic Information from Non-Linear Registration12分钟
Tissue-Level Segmentation7分钟
Papayar: Interactively Viewing Images in R22分钟
Reading1 个阅读材料
Papayar Script10分钟
Quiz10 个练习
Theme 4 Quiz 110分钟
Theme 4 Quiz 210分钟
Theme 4 Quiz 36分钟
Theme 4 Quiz 410分钟
Theme 4 Quiz 510分钟
Theme 4 Quiz 610分钟
Theme 4 Quiz 710分钟
Theme 4 Quiz 810分钟
Theme 4 Quiz 910分钟
Theme 4 Quiz 1010分钟
4.6

热门审阅

创建者 BRFeb 9th 2017

I like that this course goes through most necessary steps, my only suggest would be to have one additional week where you go through everything all together, and then do some simple group analysis.

创建者 ANJul 18th 2017

Perfect! Precise to the subject and provides a lot of hands-on details, which is, unfortunately, something that most other similar courses don't do. Absolutely loved it!

讲师

Dr. Elizabeth Sweeney

Rice Academy Postdoctoral Fellow
Biostatistics

Ciprian M. Crainiceanu

Professor
Biostatstics

John Muschelli III

Assistant Scientist
Biostatistics

关于 Johns Hopkins University

The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world....

常见问题

  • Once you enroll for a Certificate, you’ll have access to all videos, quizzes, and programming assignments (if applicable). Peer review assignments can only be submitted and reviewed once your session has begun. If you choose to explore the course without purchasing, you may not be able to access certain assignments.

  • When you purchase a Certificate you get access to all course materials, including graded assignments. Upon completing the course, your electronic Certificate will be added to your Accomplishments page - from there, you can print your Certificate or add it to your LinkedIn profile. If you only want to read and view the course content, you can audit the course for free.

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