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学生对 丹麦技术大学 提供的 Whole genome sequencing of bacterial genomes - tools and applications 的评价和反馈

4.6
374 个评分
94 条评论

课程概述

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

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MB

Jun 10, 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

XL

Jun 30, 2019

The course is using cutting-edge genome sequencing technology and the authentic software to showcasing the applications and tools of genome sequencing. It is a great chance to learn it.

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51 - Whole genome sequencing of bacterial genomes - tools and applications 的 75 个评论(共 94 个)

创建者 Luis E H F

Oct 28, 2018

It's a great course and it's not so difficult

创建者 Ahmed E A e

Oct 31, 2018

It isa fantastic course to spend your time

创建者 Kris s

Dec 08, 2017

Genuinly seems fun.

Keep it up Team at TUD

创建者 Valourstar M

Nov 15, 2017

developing skills in sequencing techniques

创建者 Sonia R Q Q

Sep 17, 2019

a complete an interesting course, thanks!

创建者 Jaya S

Nov 25, 2019

Great course. Excellent for research.

创建者 Tahir H

Dec 23, 2019

a good experience to get knowledge

创建者 Rafael P

Jun 03, 2018

Great Course!, congratulations!

创建者 IBRAHIM H A

Nov 09, 2019

This lecuers exterimly useful.

创建者 1806071

Sep 08, 2019

Very very informative course

创建者 Bologa A M

Mar 25, 2018

very useful. thanks a lot.

创建者 Moayad M A

Aug 21, 2017

very easy and interactive

创建者 俞骅

Jul 05, 2018

简单明了,适合初学者和做细菌分型溯源的生物学家

创建者 Mustafa R C

Jan 06, 2018

Very good, Thanks DTU

创建者 A A A E

Jan 08, 2019

applications

创建者 shuva s

Apr 09, 2018

Learnt a lot

创建者 Abhinandan C

Nov 16, 2017

Great One

创建者 Priya S

Nov 05, 2019

-

创建者 Signe A M

Nov 22, 2019

The course is an introduction to the Technical University of Denmark's (DTU) open access genomic tools only. Do not expect to learn about tools from other publishers.

Some of the questions for the quizzes were not covered by the video material, you either have to make educated guesses or find the information somewhere else. There is a long wait time for many of the tools, so remember to put in your e-mail address and do not expect to complete a quiz within the same day.

I preferred Rolf's lectures, they were short and well explained.

Overall I think it was a nice course for refreshing my memory but I don't believe this course is applicable outside university or similar research institutions (i.e. not so relevant if you need to integrate WGS at your workplace).

创建者 Robert G

Aug 19, 2017

This course provides a first hand view of whole genome sequencing (at the contig level anyway) as well as providing the concepts and tools for characterizing and typing bacteria and their associated plasmids. The course reviews the concepts and introduces the tools needed for determining species, type, and association between strains of bacteria. This course is directed toward microbiologists who wish to learn about using whole genome methods to type bacteria. However, anyone can learn the biology behind these methods

创建者 Maria S

Jan 05, 2018

Very good overview of the different CGE tools available for analysis of WGS bacterial genome data. Although it partly feels like pure advertisement of the tools and the videos describing usage of the different tools are very repetitive, overall the course gives a good insight. However, the instructors could put a bit more effort in answering the more complex quetions asked in the forum ins

创建者 Deleted A

Jan 24, 2019

Such a good course which gives an overview to some of the bioinformatic tools that can be employed in genome sequencing. I'm glad I enrolled for this course because it has enlightened me of the other part of molecular biology I didn't know so much about.

So thanks to all the instructors that dedicated their time to provide us with new knowledge.

创建者 Adrián L F

Apr 27, 2018

Es un curso bastante fácil para entender las herramientas bioinformáticas que tenemos actualmente para interpretar el genoma bacteriano. Curso muy recomendable para farmacéuticos, biólogos, médicos, enfermeros, biólogos sanitarios y demás componentes de las Ciencias de la Salud e incluso otras carreras científicas como Ciencias Ambientales.

创建者 Michael O S

Oct 25, 2019

Course was great! Practical hands-on knowledge about what it's like to be a microbial bioinformatician (minus coding the tools themselves). One thing I wish they had touched more deeply upon is how WGS itself works, which I was kind of expecting. But I'd say I got enough out of it to merit the price! Thank you!

创建者 Eric H

Jul 26, 2019

While this course was very helpful in learning about DTU's tools (the final project was pretty helpful), I initially thought this course would also go over non-DTU tools, so perhaps it would be better to clarify that in the course title.