A Geometrical Approach to Genome Analysis: Skew & Z-Curve

提供方
Coursera Project Network
在此指导项目中,您将:

Analyze complete genome using a geometrical method

Plot 2D- and 3D graphs in Python

Calculate, plot, and save complete genome profile

ClockAbout 60 minutes required for the project and 60 for the other materials (reading and assignment).
Intermediate中级
Cloud无需下载
Video分屏视频
Comment Dots英语(English)
Laptop仅限桌面

In this 1-hour long project-based course, you will learn how to analyze a complete viral genome using geometrical methods (skews and Z-curve), 2D- and 3D-plotting in Python, and how to use some important Python libraries (like Tkinter, Matplotlib, and NumPy) helping you accomplish this. You will also learn about the genomes of some viruses including, Corona, SARS, HIV, Zika, Nidovirous, and rubella viruses.

您要培养的技能

  • 3D
  • Personal Genomics
  • Python Programming
  • plotting
  • 2D

分步进行学习

在与您的工作区一起在分屏中播放的视频中,您的授课教师将指导您完成每个步骤:

  1. Task 1: Getting Started with Geometrical Genome Analysis.

  2. Task 2: Skew and Z-Curve definitions

  3. Task 3: Locate the Data Files

  4. Task 4: Genome cDNA to Orginal Viral RNA

  5. Task 5: Skews and Z-Curve calculations

  6. Task 6: 2D Plotting (Skews part 1 of 2)

  7. Task 7: 2D Plotting (Skews part 2 of 2)

  8. Task 8: Z-Curve 2D and 3D plotting

  9. Task 9: Export results as PDF files.

指导项目工作原理

您的工作空间就是浏览器中的云桌面,无需下载

在分屏视频中,您的授课教师会为您提供分步指导

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